Beast Wars Second Episode List (1998 - 1999)
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| # | Title | Writer | Broadcast Date (Japan) |
| 1 | The New Forces Arrive! | Junki Takegami | 01/04/1998 |
| 2 | White Lion, Run! | Junki Takegami | 08/04/1998 |
| 3 | Bighorn's Rage | Yukiyoshi Ohashi | 15/04/1998 |
| 4 | The Lake Trap | Kazuhiko Godo | 22/04/1998 |
| 5 | Galvatron Revived | Yukiyoshi Ohashi | 29/04/1998 |
| 6 | Mystery of the Ancient Ruins | Junki Takegami | 06/05/1998 |
| 7 | The Insect Corps Arrive | Kazuhiko Godo | 13/05/1998 |
| 8 | The Insect Robos—Friend or Foe? | Yukiyoshi Ohashi | 20/05/1998 |
| 9 | The Strongest Tag Team? | Kazuhiko Godo | 27/05/1998 |
| 10 | Autorollers Roll Out! | Kazuhiko Godo | 03/06/1998 |
| 11 | Danger, Scissor Boy! | Yukiyoshi Ohashi | 10/06/1998 |
| 12 | Galvatron Rampages | Junki Takegami | 17/06/1998 |
| 13 | Destron General Offensive! | Junki Takegami, Yukiyoshi Ōhashi, Kazuhiko Gōdo (Clip Show) | 24/06/1998 |
| 14 | The Combined Giant, Tripledacus | Yukiyoshi Ohashi | 01/07/1998 |
| 15 | The Festive Jointrons | Kazuhiko Godo | 08/07/1998 |
| 16 | A Fearsome Combination Plan? | Junki Takegami | 15/07/1998 |
| 17 | Who Is the Leader!? | Yukiyoshi Ohashi | 22/07/1998 |
| 18 | The Black Lio Convoy | Junki Takegami | 29/07/1998 |
| 19 | The Space Pirate Seacons! | Junki Takegami | 05/08/1998 |
| 20 | Who Is the Strongest Warrior!? | Junki Takegami (Clip Show) | 12/08/1998 |
| 21 | The Tentacular Scuba | Yukiyoshi Ohashi | 19/08/1998 |
| 22 | Megastorm's Reckoning | Kazuhiko Godo | 26/08/1998 |
| 23 | Underwater Showdown | Junki Takegami | 02/09/1998 |
| 24 | Face the Setting Sun | Yukiyoshi Ohashi | 09/09/1998 |
| 25 | The Final Battle | Kazuhiko Godo | 16/09/1998 |
| 26 | Enter Lio Junior | Junki Takegami | 23/09/1998 |
| 27 | Megastorm Reborn | Junki Takegami | 30/09/1998 |
| 28 | The New Weapon, Tako Tank | Yukiyoshi Ohashi | 07/10/1998 |
| 29 | The Artificial Planet Nemesis | Junki Takegami (Clip Show) | 14/10/1998 |
| 30 | Gigastorm's Treachery | Yukiyoshi Ohashi | 21/10/1998 |
| 31 | The End of Starscream | Junki Takegami | 28/10/1998 |
| 32 | The Lio Convoy Assassination Plot | Junki Takegami | 04/11/1998 |
| 33 | The Great Angolmois Freezing Tactic | Yukiyoshi Ohashi | 11/11/1998 |
| 34 | Knock Out Nemesis | Junki Takegami | 18/11/1998 |
| 35 | Lio Junior's Revolt! | Kazuhiko Godo | 25/11/1998 |
| 36 | Emissary of the Fourth Planet | Junki Takegami | 02/12/1998 |
| 37 | The Crisis of Planet Gaea | Junki Takegami | 09/12/1998 |
| 38 | Fly Out! Planet Gaea | Yukiyoshi Ohashi | 16/12/1998 |
| 39 | Assemble, Thirty-Nine Warriors | Junki Takegami (Clip Show) | 23/12/1998 |
| 40 | Revenge of the Space Pirates | Kazuhiko Godo | 06/01/1999 |
| 41 | Breaking into Nemesis | Junki Takegami | 13/01/1999 |
| 42 | Legend! The Green Warrior | Junki Takegami | 20/01/1999 |
| 43 | Farewell, Lio Convoy! | Junki Takegami | 27/01/1999 |
| Special (Cartoon released Theatrically in 3 parts) | |||
| 44 | Beast Wars II: Super Lifeform Transformers: Clash! Beast Warriors | Clip Show recap from the First Beast Wars Series | 19/12/1998 |
| 45 | Beast Wars II: Super Lifeform Transformers: Lio Convoy in Imminent Danger | Nagata Toshiyasu | |
| 46 | Beast Wars II: Super Lifeform Transformers: Beast Wars Metals | Greg Johnson (Bad Spark) | |
